Nimbus Wiki
Welcome to the Nimbus Wiki, a lightweight knowledge base for computational immunology. Browse the topics below to learn more about our work.
Antigen Recognition
- Antigen Presentation
A comprehensive guide to how the immune system processes and displays antigens to T cells through MHC molecules, enabling adaptive immune responses.
- The HLA System
A comprehensive guide to the human leukocyte antigen system, including genetics, structure, function, and clinical significance in disease and transplantation.
B Cell Biology
- Affinity Maturation
A comprehensive guide to how the immune system evolves increasingly potent antibodies through iterative cycles of mutation and selection in germinal centers.
- Immunoglobulin Gene Recombination
A comprehensive guide to how B cells assemble unique antibody genes through V(D)J recombination at the immunoglobulin heavy and light chain loci.
- Germinal Centers
A comprehensive guide to the specialized microanatomical structures where B cells undergo affinity maturation, class switching, and memory formation during T-dependent immune responses.
- Somatic Hypermutation
A comprehensive guide to how B cells evolve higher-affinity antibodies through targeted mutation in germinal centers, including the molecular mechanisms, regulation, and clinical significance.
Immune Development
- B Cell Development
A comprehensive guide to B lymphocyte development, from hematopoietic stem cells in the bone marrow through mature B cell subsets in the periphery.
- Immune Tolerance
A comprehensive guide to how the immune system distinguishes self from non-self and prevents autoimmunity through central and peripheral tolerance mechanisms.
- T Cell Development
A comprehensive guide to T lymphocyte development in the thymus, including stages of maturation, TCR rearrangement, positive and negative selection, and lineage commitment.
Repertoire Analysis
- Immune Repertoire
A comprehensive guide to the complete collection of T cell and B cell receptors in an individual, including diversity metrics, clonality analysis, and clinical applications.
Fundamental Mechanisms
- V(D)J Recombination
A comprehensive guide to the molecular mechanism that generates immune receptor diversity through somatic recombination of variable, diversity, and joining gene segments.
Diagnostics
- Autoimmune Disease Diagnostics
How immune repertoire sequencing enables new diagnostic approaches for autoimmune diseases, from HLA-B27 spondyloarthropathy to celiac disease.
- MRD Testing in Hematologic Malignancies
How immune repertoire sequencing enables sensitive detection of minimal residual disease in lymphoma, leukemia, and multiple myeloma.
- Transplant Immune Monitoring
Using immune repertoire sequencing to monitor rejection risk, immune reconstitution, and tolerance in solid organ and hematopoietic stem cell transplantation.
T Cell Biology
- T Cell Receptor Structure
A comprehensive guide to the molecular architecture of the T cell receptor, including alpha and beta chains, complementarity-determining regions, and the mechanisms of antigen recognition.
Platform
- Immune Repertoire Sequencing Technologies
A comprehensive guide to technologies for sequencing T cell and B cell receptors, from bulk methods to single-cell approaches.
Resources
- Glossary of Terms
Definitions of key terms in adaptive immunology, immune repertoire sequencing, and immunodiagnostics.
- Immunology Resources
A curated collection of databases, software tools, educational materials, and community resources for adaptive immunology research.